PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080296.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 232aa    MW: 25972.7 Da    PI: 5.5068
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.5e-3971071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  XP_011080296.1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a+lke+
  XP_011080296.1 102 ASLKEQ 107
                     *99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.126108IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKEQAAQ CLINNSNITA  120
NPNDQKFYGS SHSNFSQDVQ SWWNSFQNQG TMPQFDANFN NNNFENMAYY ASGTMNPSDP  180
SMKYENSGFP EENTSFGSMD SLEMQSNERQ WPFQDDADDL QSVPFRYINN QH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080296.11e-176PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J76e-71LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA5AIW91e-109A5AIW9_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g03020.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-61lateral organ boundaries-domain 29